Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs34365165 chr16:24856208 G/A 2.87E-6 119 45.87 28 31.37 KM Plot
THYM rs34486701 chr21:45590125 T/C 0.000136 116 37.73 51.23 28.43 KM Plot
THYM rs34491701 chr13:22515981 G/GT 0.00029 117 41.22 32.7 27.1 KM Plot
THYM rs34493168 chr3:52966821 A/G 0.000223 119 42.9 23.75 25.63 KM Plot
THYM rs34504996 chr15:71814814 G/A 1.51E-6 116 39.75 47.63 12.52 KM Plot
THYM rs34505581 chr4:12569582 TTA/T 1.01E-6 118 38.23 57.27 12.78 KM Plot
THYM rs34522787 chr4:56729569 C/T 1.66E-5 119 39.75 50.97 9.43 KM Plot
THYM rs34550655 chr8:50147654 A/G 2.69E-10 118 46.27 50.82 25.83 KM Plot
THYM rs34566335 chr6:117119402 A/AG 5.68E-5 115 19.03 50.97 38.83 KM Plot
THYM rs34568803 chr6:3266838 G/A 0 118 4.13 42.73 38.58 KM Plot
THYM rs34589905 chr2:178289180 ATT/ATTT 0 119 39.75 44.67 4.13 KM Plot
THYM rs34594856 chr6:163051845 C/T 0.000281 118 46.23 27.33 25.4 KM Plot
THYM rs34632150 chr10:1534811 G/A 0.000185 117 39.5 42.82 25.83 KM Plot
THYM rs34655906 chr1:210539298 T/C 0.00015 116 46.6 32.7 NA KM Plot
THYM rs34656908 chr7:76137924 C/T 0.000249 119 40.67 45.87 28.43 KM Plot